Package 'RISmed'

Title: Download Content from NCBI Databases
Description: A set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed.
Authors: Stephanie Kovalchik [aut, cre]
Maintainer: Stephanie Kovalchik <[email protected]>
License: GPL (>= 2)
Version: 2.3.2
Built: 2025-03-05 02:45:53 UTC
Source: https://github.com/skoval/rismed

Help Index


Download content from NCBI databases.

Description

Download content from NCBI databases. This package is intended to facilitate analyses of NCBI database content. This package is not intended for reference management.

Details

Package: RISmed
Type: Package
Version: 2.1.3
Date: 2014-7-20
License: GPL (>=2)
LazyLoad: yes

Note on usage:

In order not to overload the E-utility servers, NCBI recommends that users post no more than three URL requests per second and limit large jobs to either weekends or between 9:00 PM and 5:00 AM Eastern time during weekdays. Failure to comply with this policy may result in an IP address being blocked from accessing NCBI.

Author(s)

Maintainer: Stephanie Kovalchik <[email protected]>


Extracts AbstractText from Medline object.

Description

Extractor for the AbstractText of a Medline object.

Usage

AbstractText(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
AbstractText(myeloma)

~~ Methods for Function AbstractText in Package RISmed ~~

Description

~~ Methods for function AbstractText in package RISmed ~~

Methods

signature(object = "Medline")

Extracts Affiliation from Medline object.

Description

Extractor for the Affiliation of a Medline object.

Usage

Affiliation(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
Affiliation(myeloma)

~~ Methods for Function Affiliation in Package RISmed ~~

Description

~~ Methods for function Affiliation in package RISmed ~~

Methods

signature(object = "Medline")

Extracts ArticleId from Medline object.

Description

Extractor for the ArticleId of a Medline object.

Usage

ArticleId(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
ArticleId(myeloma)

~~ Methods for Function ArticleId in Package RISmed ~~

Description

~~ Methods for function ArticleId in package RISmed ~~

Methods

signature(object = "Medline")

Extracts ArticleTitle from Medline object.

Description

Extractor for the ArticleTitle of a Medline object.

Usage

ArticleTitle(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
ArticleTitle(myeloma)

~~ Methods for Function ArticleTitle in Package RISmed ~~

Description

~~ Methods for function ArticleTitle in package RISmed ~~

Methods

signature(object = "Medline")

Extracts Author from Medline object.

Description

Extractor for the Author of a Medline object.

Usage

Author(object)

Arguments

object

instance of class Medline

Value

List by Pubmed article. Each list contains a data frame with CollectiveName, LastName, ForeName, Initials, and order of article authors.

See Also

Medline

Examples

data(myeloma)
Author(myeloma)

~~ Methods for Function Author in Package RISmed ~~

Description

~~ Methods for function Author in package RISmed ~~

Methods

signature(object = "Medline")

List by Pubmed article. Each list contains a data frame with LastName, ForeName, Initials, and order of article authors.


Extracts BookBeginningDate from Medline object.

Description

Extractor for the BookBeginningDate of a Medline object.

Usage

BookBeginningDate(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
BookBeginningDate(myeloma)

~~ Methods for Function BookBeginningDate in Package RISmed ~~

Description

~~ Methods for function BookBeginningDate in package RISmed ~~

Methods

signature(object = "Medline")

Extracts BookEditors from Medline object.

Description

Extractor for the BookEditors of a Medline object.

Usage

BookEditors(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
BookEditors(myeloma)

~~ Methods for Function BookEditors in Package RISmed ~~

Description

~~ Methods for function BookEditors in package RISmed ~~

Methods

signature(object = "Medline")

Extracts BookEndingDate from Medline object.

Description

Extractor for the BookEndingDate of a Medline object.

Usage

BookEndingDate(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
BookEndingDate(myeloma)

~~ Methods for Function BookEndingDate in Package RISmed ~~

Description

~~ Methods for function BookEndingDate in package RISmed ~~

Methods

signature(object = "Medline")

Extracts BookMedium from Medline object.

Description

Extractor for the BookMedium of a Medline object.

Usage

BookMedium(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
BookMedium(myeloma)

~~ Methods for Function BookMedium in Package RISmed ~~

Description

~~ Methods for function BookMedium in package RISmed ~~

Methods

signature(object = "Medline")

Extracts BookPublisher from Medline object.

Description

Extractor for the BookPublisher of a Medline object.

Usage

BookPublisher(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
BookPublisher(myeloma)

~~ Methods for Function BookPublisher in Package RISmed ~~

Description

~~ Methods for function BookPublisher in package RISmed ~~

Methods

signature(object = "Medline")

Extracts BookPublisherLocation from Medline object.

Description

Extractor for the BookPublisherLocation of a Medline object.

Usage

BookPublisherLocation(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
BookPublisherLocation(myeloma)

~~ Methods for Function BookPublisherLocation in Package RISmed ~~

Description

~~ Methods for function BookPublisherLocation in package RISmed ~~

Methods

signature(object = "Medline")

Extracts BookTitle from Medline object.

Description

Extractor for the BookTitle of a Medline object.

Usage

BookTitle(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
BookTitle(myeloma)

~~ Methods for Function BookTitle in Package RISmed ~~

Description

~~ Methods for function BookTitle in package RISmed ~~

Methods

signature(object = "Medline")

Concatenate Medline

Description

Concatenates multiple Medline objects

Usage

## S4 method for signature 'Medline'
c(x, ...)

Arguments

x

a Medline object

...

Additional Medline objects to concatenate

Value

A Medline object


List of citing article titles where listed in PubMed.

Description

Retrieves the number of citations in PubMed Central for the articles contained in the Medline object.

Usage

Citations(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline


~~ Methods for Function Citations in Package RISmed ~~

Description

~~ Methods for function Citations in package RISmed ~~

Methods

signature(object = "Medline")

Extracts COIStatement from Medline object.

Description

Extractor for the COIStatement of a Medline object.

Usage

COIStatement(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline


~~ Methods for Function COIStatement in Package RISmed ~~

Description

~~ Methods for function COIStatement in package RISmed ~~

Methods

signature(object = "Medline")

Extracts CopyrightInformation from Medline object.

Description

Extractor for the CopyrightInformation of a Medline object.

Usage

CopyrightInformation(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
CopyrightInformation(myeloma)

~~ Methods for Function CopyrightInformation in Package RISmed ~~

Description

~~ Methods for function CopyrightInformation in package RISmed ~~

Methods

signature(object = "Medline")

Extracts Country from Medline object.

Description

Extractor for the Country of a Medline object.

Usage

Country(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
Country(myeloma)

~~ Methods for Function Country in Package RISmed ~~

Description

~~ Methods for function Country in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DayAccepted from Medline object.

Description

Extractor for the DayAccepted of a Medline object. This date corresponds to the date the article was accepted.

Usage

DayAccepted(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DayAccepted(myeloma)

~~ Methods for Function DayAccepted in Package RISmed ~~

Description

~~ Methods for function DayAccepted in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DayArticleDate from Medline object.

Description

Extractor for the DayArticleDate of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

DayArticleDate(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DayArticleDate(myeloma)

~~ Methods for Function DayArticleDate in Package RISmed ~~

Description

~~ Methods for function DayArticleDate in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DayEntrez from Medline object.

Description

Extractor for the DayEntrez of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

DayEntrez(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DayEntrez(myeloma)

~~ Methods for Function DayEntrez in Package RISmed ~~

Description

~~ Methods for function DayEntrez in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DayEpublish from Medline object.

Description

Extractor for the DayEpublish of a Medline object. This date corresponds to the date the article was published online.

Usage

DayEpublish(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DayEpublish(myeloma)

~~ Methods for Function DayEpublish in Package RISmed ~~

Description

~~ Methods for function DayEpublish in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DayMedline from Medline object.

Description

Extractor for the DayMedline of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

DayMedline(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DayMedline(myeloma)

~~ Methods for Function DayMedline in Package RISmed ~~

Description

~~ Methods for function DayMedline in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DayPmc from Medline object.

Description

Extractor for the DayPmc of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.

Usage

DayPmc(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DayPmc(myeloma)

~~ Methods for Function DayPmc in Package RISmed ~~

Description

~~ Methods for function DayPmc in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DayPpublish from Medline object.

Description

Extractor for the DayPpublish of a Medline object. This date corresponds to the date the article was published in print.

Usage

DayPpublish(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DayPpublish(myeloma)

~~ Methods for Function DayPpublish in Package RISmed ~~

Description

~~ Methods for function DayPpublish in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DayPubDate from Medline object.

Description

Extractor for the DayPubDate of a Medline object. This date corresponds to the date the article was PubDate.

Usage

DayPubDate(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DayPubDate(myeloma)

~~ Methods for Function DayPubDate in Package RISmed ~~

Description

~~ Methods for function DayPubDate in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DayPubmed from Medline object.

Description

Extractor for the DayPubmed of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.

Usage

DayPubmed(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DayPubmed(myeloma)

~~ Methods for Function DayPubmed in Package RISmed ~~

Description

~~ Methods for function DayPubmed in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DayReceived from Medline object.

Description

Extractor for the DayReceived of a Medline object. This date corresponds to the date the article was received.

Usage

DayReceived(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DayReceived(myeloma)

~~ Methods for Function DayReceived in Package RISmed ~~

Description

~~ Methods for function DayReceived in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DayRevised from Medline object.

Description

Extractor for the DayRevised of a Medline object. This date corresponds to the date the article was Revised.

Usage

DayRevised(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DayRevised(myeloma)

~~ Methods for Function DayRevised in Package RISmed ~~

Description

~~ Methods for function DayRevised in package RISmed ~~

Methods

signature(object = "Medline")

Extracts DOI from Medline object.

Description

Extractor for the DOI of a Medline object.

Usage

DOI(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
DOI(myeloma)

~~ Methods for Function DOI in Package RISmed ~~

Description

~~ Methods for function DOI in package RISmed ~~

Methods

signature(object = "Medline")

Extracts ELocationID from Medline object.

Description

Extractor for the ELocationID of a Medline object.

Usage

ELocationID(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
ELocationID(myeloma)

~~ Methods for Function ELocationID in Package RISmed ~~

Description

~~ Methods for function ELocationID in package RISmed ~~

Methods

signature(object = "Medline")

Results of an NCBI EUtils query

Description

Download results of a query for any database of the National Center for Biotechnology Information (NCBI).

Usage

EUtilsGet(x,type="efetch",db="pubmed")

Arguments

x

Either vector of NCBI records ids, i.e. returned ids from EUtilsSummary, or the EUtilsSummary object itself

type

string indicating type of NCBI Eutility, efetch, esummary, etc.

db

string indicating the NCBI database used in query

Details

Possible E-utilities to supply to type are efetch, esummary, and elink.

The database name supplied to db can be any valid Entrez database, such as pubmed, protein, nlm, etc.

For further details on available E-utilities and databases visit https://www.ncbi.nlm.nih.gov/books/NBK25499/.

Note on usage:

In order not to overload the E-utility servers, NCBI recommends that users post no more than three URL requests per second and limit large jobs to either weekends or between 9:00 PM and 5:00 AM Eastern time during weekdays. Failure to comply with this policy may result in an IP address being blocked from accessing NCBI.

Value

For queries to PubMed, a list by article, with named vectors for each field of the article result.

For all other database, a list of the XML tree strucure used where XML output is available in E-Utils.

Author(s)

Stephanie Kovalchik [email protected]

References

Summary help:

https://www.ncbi.nlm.nih.gov/books/NBK3827/

MEDLINE/PubMed Field Descriptions

https://www.nlm.nih.gov/bsd/mms/medlineelements.html

See Also

EUtilsSummary


Construct URL to make NCBI EUtils query

Description

Construct a URL query for any database of the National Center for Biotechnology Information (NCBI).

Usage

EUtilsQuery(query,type="esearch",db="pubmed",...)

Arguments

query

string query as given in NCBI search box

type

string indicating type of NCBI Eutility

db

string indicating the NCBI database used in query

...

additional limits added to query

Details

Possible E-utilities to supply to type are einfo, esearch, epost, esummary, elink, egquery, espell.

The database name supplied to db can be any valid Entrez database, such as pubmed, protein, nlm, etc.

For further details on available E-utilities and databases visit https://www.ncbi.nlm.nih.gov/books/NBK25499/.

Limits that can be supplied to ... to refine the query include:

reldate Limits search results to be within the specified number of days from current date.
mindate Minimum of date range for search results (examples: 2002; 2002/01/01); must be supplied with maxdate.
maxdate Maximum of date range for search results; must be supplied with mindate.
datetype Which date field to use in setting date limits. Possible choices are edat, Entrez date, which is the date article was added to Entez, or ppdt, the article publication date. Default is edat.
retstart Where in the sequence of returned results to begin retrieving, default is 0.
retmax Maximum number of records to retrieve, default is 1000.

Value

String URL to access NCBI E-utility.

Author(s)

Stephanie Kovalchik [email protected]

References

Query help:

https://www.ncbi.nlm.nih.gov/books/NBK3827/

MEDLINE/PubMed Field Descriptions

https://www.nlm.nih.gov/bsd/mms/medlineelements.html

Examples

# PUBMED QUERY
EUtilsQuery("myeloma[ti] jones[au]")

# RESTRICT TO RECORDS WITHIN LAST 30 days
EUtilsQuery("myeloma[ti] jones[au]",reldat=30)

Get summary of NCBI EUtils query

Description

Get summary information on the results of a query for any database of the National Center for Biotechnology Information (NCBI).

Usage

EUtilsSummary(query,type="esearch",db="pubmed",url=NULL,encoding="unknown",...)

Arguments

query

string query as given in NCBI search box

type

string indicating type of NCBI Eutility

db

string indicating the NCBI database used in query

url

string of url to bypass query construction

encoding

encoding to be assumed for input strings, see readLines

...

additional limits added to query

Details

Possible E-utilities to supply to type are einfo, esearch, epost, esummary, elink, egquery, espell.

The database name supplied to db can be any valid Entrez database, such as pubmed, protein, nlm, etc.

For further details on available E-utilities and databases visit https://www.ncbi.nlm.nih.gov/books/NBK25499/.

Limits that can be supplied to ... to refine the query include:

reldate Limits search results to be within the specified number of days from current date.
mindate Minimum of date range for search results (examples: 2002; 2002/01/01); must be supplied with maxdate.
maxdate Maximum of date range for search results; must be supplied with mindate.
datetype Which date field to use in setting date limits. Possible choices are edat, Entrez date, which is the date article was added to Entez, or ppdt, the article publication date. Default is edat.
retstart Where in the sequence of returned results to begin retrieving, default is 0.
retmax Maximum number of records to retrieve, default is 1000.

Value

Returns an EUtilsSummary object.

Author(s)

Stephanie Kovalchik [email protected]

References

Summary help:

https://www.ncbi.nlm.nih.gov/books/NBK3827/

MEDLINE/PubMed Field Descriptions

https://www.nlm.nih.gov/bsd/mms/medlineelements.html

See Also

EUtilsQuery


Class "EUtilsSummary"

Description

Summary of query of an NCBI E-utility

Objects from the Class

Objects can be created by calls of the form new("EUtilsSummary", ...).

Slots

db:

Name of database

count:

total ids

retmax:

limit on number of records to return

retstart:

numeric indicating where return records start

PMID:

character vector of matching ids

querytranslation:

character of NCBI translation of query

Methods

QueryCount

signature(object = "EUtilsSummary"): ...

QueryId

signature(object = "EUtilsSummary"): ...

print

signature(x = "EUtilsSummary"): ...

show

signature(object = "EUtilsSummary"): ...

summary

signature(object = "EUtilsSummary"): ...

QueryTranslation

signature(object = "EUtilsSummary"): ...

Author(s)

Stephanie Kovalchik


Extracts list of GrantID info Medline object including GrantID and GrantAgency where listed in PubMed.

Description

Extractor for the GrantID of a Medline object.

Usage

GrantID(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
GrantID(myeloma)

~~ Methods for Function GrantID in Package RISmed ~~

Description

~~ Methods for function GrantID in package RISmed ~~

Methods

signature(object = "Medline")

Extracts HourAccepted from Medline object.

Description

Extractor for the HourAccepted of a Medline object. This date corresponds to the date the article was accepted.

Usage

HourAccepted(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
HourAccepted(myeloma)

~~ Methods for Function HourAccepted in Package RISmed ~~

Description

~~ Methods for function HourAccepted in package RISmed ~~

Methods

signature(object = "Medline")

Extracts HourEntrez from Medline object.

Description

Extractor for the HourEntrez of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

HourEntrez(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
HourEntrez(myeloma)

~~ Methods for Function HourEntrez in Package RISmed ~~

Description

~~ Methods for function HourEntrez in package RISmed ~~

Methods

signature(object = "Medline")

Extracts HourEpublish from Medline object.

Description

Extractor for the HourEpublish of a Medline object. This date corresponds to the date the article was published online.

Usage

HourEpublish(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
HourEpublish(myeloma)

~~ Methods for Function HourEpublish in Package RISmed ~~

Description

~~ Methods for function HourEpublish in package RISmed ~~

Methods

signature(object = "Medline")

Extracts HourMedline from Medline object.

Description

Extractor for the HourMedline of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

HourMedline(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
HourMedline(myeloma)

~~ Methods for Function HourMedline in Package RISmed ~~

Description

~~ Methods for function HourMedline in package RISmed ~~

Methods

signature(object = "Medline")

Extracts HourPmc from Medline object.

Description

Extractor for the HourPmc of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.

Usage

HourPmc(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
HourPmc(myeloma)

~~ Methods for Function HourPmc in Package RISmed ~~

Description

~~ Methods for function HourPmc in package RISmed ~~

Methods

signature(object = "Medline")

Extracts HourPpublish from Medline object.

Description

Extractor for the HourPpublish of a Medline object. This date corresponds to the date the article was published in print.

Usage

HourPpublish(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
HourPpublish(myeloma)

~~ Methods for Function HourPpublish in Package RISmed ~~

Description

~~ Methods for function HourPpublish in package RISmed ~~

Methods

signature(object = "Medline")

Extracts HourPubmed from Medline object.

Description

Extractor for the HourPubmed of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.

Usage

HourPubmed(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
HourPubmed(myeloma)

~~ Methods for Function HourPubmed in Package RISmed ~~

Description

~~ Methods for function HourPubmed in package RISmed ~~

Methods

signature(object = "Medline")

Extracts HourReceived from Medline object.

Description

Extractor for the HourReceived of a Medline object. This date corresponds to the date the article was received.

Usage

HourReceived(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
HourReceived(myeloma)

~~ Methods for Function HourReceived in Package RISmed ~~

Description

~~ Methods for function HourReceived in package RISmed ~~

Methods

signature(object = "Medline")

Extracts ISOAbbreviation from Medline object.

Description

Extractor for the ISOAbbreviation of a Medline object.

Usage

ISOAbbreviation(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
ISOAbbreviation(myeloma)

~~ Methods for Function ISOAbbreviation in Package RISmed ~~

Description

~~ Methods for function ISOAbbreviation in package RISmed ~~

Methods

signature(object = "Medline")

Extracts ISSN from Medline object.

Description

Extractor for the ISSN of a Medline object.

Usage

ISSN(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
ISSN(myeloma)

~~ Methods for Function ISSN in Package RISmed ~~

Description

~~ Methods for function ISSN in package RISmed ~~

Methods

signature(object = "Medline")

Extracts ISSNLinking from Medline object.

Description

Extractor for the ISSNLinking of a Medline object.

Usage

ISSNLinking(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
ISSNLinking(myeloma)

~~ Methods for Function ISSNLinking in Package RISmed ~~

Description

~~ Methods for function ISSNLinking in package RISmed ~~

Methods

signature(object = "Medline")

Extracts Issue from Medline object.

Description

Extractor for the Issue of a Medline object.

Usage

Issue(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
Issue(myeloma)

~~ Methods for Function Issue in Package RISmed ~~

Description

~~ Methods for function Issue in package RISmed ~~

Methods

signature(object = "Medline")

Extracts list of Keywords info from Medline object.

Description

Extractor for the Keywords of a Medline object.

Usage

Keywords(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
Keywords(myeloma)

~~ Methods for Function Keywords in Package RISmed ~~

Description

~~ Methods for function Keywords in package RISmed ~~

Methods

signature(object = "Medline")

Extracts Language from Medline object.

Description

Extractor for the Language of a Medline object.

Usage

Language(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
Language(myeloma)

~~ Methods for Function Language in Package RISmed ~~

Description

~~ Methods for function Language in package RISmed ~~

Methods

signature(object = "Medline")

Class "Medline"

Description

Class for Medline citation of query to PubMed.

Objects from the Class

Objects can be created by calls of the form new("Medline", ...).

Slots

Unless stated otherwise, each of the components is a vector of the given field where each element corresponds to a PubMed article.

Query:
PMID:
YearPubDate:
MonthPubDate:
DayPubDate:
YearRevised:
MonthRevised:
DayRevised:
YearEntrez:
MonthEntrez:
DayEntrez:
HourEntrez:
MinuteEntrez:
YearArticleDate:
MonthArticleDate:
DayArticleDate:
YearMedline:
MonthMedline:
DayMedline:
HourMedline:
MinuteMedline:
YearAccepted:
MonthAccepted:
DayAccepted:
HourAccepted:
MinuteAccepted:
YearReceived:
MonthReceived:
DayReceived:
HourReceived:
MinuteReceived:
YearEpublish:
MonthEpublish:
DayEpublish:
HourEpublish:
MinuteEpublish:
YearPpublish:
MonthPpublish:
DayPpublish:
HourPpublish:
MinutePpublish:
YearPmc:
MonthPmc:
DayPmc:
HourPmc:
MinutePmc:
YearPubmed:
MonthPubmed:
DayPubmed:
HourPubmed:
MinutePubmed:
Author:

list of data frames giving LastName, ForeName, Initials, and order of authors by PubMed article.

ISSN:
Title:
ArticleTitle:
ELocationID:
AbstractText:
Affiliation:
Language:
PublicationType:
MedlineTA:
NlmUniqueID:
ISSNLinking:
PublicationStatus:
ArticleId:
DOI:
Volume:
Issue:
ISOAbbreviation:
MedlinePgn:
CopyrightInformation:
Country:
GrantID:
COIStatement:
Mesh:

list of data frames giving Heading and Type of MeSH term or NA if no terms are in MEDLINE record

Keywords:
Citations:

Methods

In addition to print and show methods, each slot of the Medline class has a corresponding extractor of the same name.

print

signature(x = "Medline", ...): ...

show

signature(object = "Medline"): ...

c

signature(x = "Medline", ...): ...

Query

signature(object = "Medline"): ...

PMID

signature(object = "Medline"): ...

YearPubDate

signature(object = "Medline"): ...

MonthPubDate

signature(object = "Medline"): ...

DayPubDate

signature(object = "Medline"): ...

YearRevised

signature(object = "Medline"): ...

MonthRevised

signature(object = "Medline"): ...

DayRevised

signature(object = "Medline"): ...

YearEntrez

signature(object = "Medline"): ...

MonthEntrez

signature(object = "Medline"): ...

DayEntrez

signature(object = "Medline"): ...

HourEntrez

signature(object = "Medline"): ...

MinuteEntrez

signature(object = "Medline"): ...

YearArticleDate

signature(object = "Medline"): ...

MonthArticleDate

signature(object = "Medline"): ...

DayArticleDate

signature(object = "Medline"): ...

YearMedline

signature(object = "Medline"): ...

MonthMedline

signature(object = "Medline"): ...

DayMedline

signature(object = "Medline"): ...

HourMedline

signature(object = "Medline"): ...

MinuteMedline

signature(object = "Medline"): ...

YearAccepted

signature(object = "Medline"): ...

MonthAccepted

signature(object = "Medline"): ...

DayAccepted

signature(object = "Medline"): ...

HourAccepted

signature(object = "Medline"): ...

MinuteAccepted

signature(object = "Medline"): ...

YearReceived

signature(object = "Medline"): ...

MonthReceived

signature(object = "Medline"): ...

DayReceived

signature(object = "Medline"): ...

HourReceived

signature(object = "Medline"): ...

MinuteReceived

signature(object = "Medline"): ...

YearEpublish

signature(object = "Medline"): ...

MonthEpublish

signature(object = "Medline"): ...

DayEpublish

signature(object = "Medline"): ...

HourEpublish

signature(object = "Medline"): ...

MinuteEpublish

signature(object = "Medline"): ...

YearPpublish

signature(object = "Medline"): ...

MonthPpublish

signature(object = "Medline"): ...

DayPpublish

signature(object = "Medline"): ...

HourPpublish

signature(object = "Medline"): ...

MinutePpublish

signature(object = "Medline"): ...

YearPmc

signature(object = "Medline"): ...

MonthPmc

signature(object = "Medline"): ...

DayPmc

signature(object = "Medline"): ...

HourPmc

signature(object = "Medline"): ...

MinutePmc

signature(object = "Medline"): ...

YearPubmed

signature(object = "Medline"): ...

MonthPubmed

signature(object = "Medline"): ...

DayPubmed

signature(object = "Medline"): ...

HourPubmed

signature(object = "Medline"): ...

MinutePubmed

signature(object = "Medline"): ...

Author

signature(object = "Medline"): ...

ISSN

signature(object = "Medline"): ...

Title

signature(object = "Medline"): ...

ArticleTitle

signature(object = "Medline"): ...

ELocationID

signature(object = "Medline"): ...

AbstractText

signature(object = "Medline"): ...

Affiliation

signature(object = "Medline"): ...

Language

signature(object = "Medline"): ...

PublicationType

signature(object = "Medline"): ...

MedlineTA

signature(object = "Medline"): ...

NlmUniqueID

signature(object = "Medline"): ...

ISSNLinking

signature(object = "Medline"): ...

PublicationStatus

signature(object = "Medline"): ...

ArticleId

signature(object = "Medline"): ...

DOI

signature(object = "Medline"): ...

Volume

signature(object = "Medline"): ...

Issue

signature(object = "Medline"): ...

ISOAbbreviation

signature(object = "Medline"): ...

MedlinePgn

signature(object = "Medline"): ...

CopyrightInformation

signature(object = "Medline"): ...

Country

signature(object = "Medline"): ...

GrantID

signature(object = "Medline"): ...

COIStatement

signature(object = "Medline"): ...

Mesh

signature(object = "Medline"): ...

Keywords

signature(object = "Medline"): ...

Affiliations

signature(object = "Medline"): ...

BookPublisher

signature(object = "Medline"): ...

BookPublisherLocation

signature(object = "Medline"): ...

BookTitle

signature(object = "Medline"): ...

BookBeginningDate

signature(object = "Medline"): ...

BookEndingDate

signature(object = "Medline"): ...

BookEditors

signature(object = "Medline"): ...

BookMedium

signature(object = "Medline"): ...

Author(s)

Stephanie Kovalchik


Extracts MedlinePgn from Medline object.

Description

Extractor for the MedlinePgn of a Medline object.

Usage

MedlinePgn(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
MedlinePgn(myeloma)

~~ Methods for Function MedlinePgn in Package RISmed ~~

Description

~~ Methods for function MedlinePgn in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MedlineTA from Medline object.

Description

Extractor for the MedlineTA of a Medline object.

Usage

MedlineTA(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
MedlineTA(myeloma)

~~ Methods for Function MedlineTA in Package RISmed ~~

Description

~~ Methods for function MedlineTA in package RISmed ~~

Methods

signature(object = "Medline")

Extracts Mesh headings from Medline object.

Description

Extractor for the Mesh headings of a Medline object.

Usage

Mesh(object)

Arguments

object

instance of class Medline

Details

In Process and publisher-supplied records lack MeSH terms. See the MeSH home page https://www.nlm.nih.gov/mesh/meshhome.html for additional information about MeSH. Note that more recent records may lack MeSH headings.

Value

List by Pubmed article. Each list contains a data frame with Heading and Type. The Heading is a MeSH Term and Type is either a Descriptor or a Qualifier of a Descriptor term. Qualifiers of a Descriptor immediately follow the Descriptor term in the data frame. When MeSH headings have not been included with a MEDLINE record, the list will contain NAs (see details).

See Also

Medline


~~ Methods for Function Mesh in Package RISmed ~~

Description

~~ Methods for function Mesh in package RISmed ~~

Methods

signature(object = "Medline")

List by Pubmed article. Each list contains a data frame with Heading and Type. The Heading is a MeSH Term and Type is either a Descriptor or a Qualifier of a Descriptor term.


Extracts MinuteAccepted from Medline object.

Description

Extractor for the MinuteAccepted of a Medline object. This date corresponds to the date the article was accepted.

Usage

MinuteAccepted(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MinuteAccepted(myeloma)

~~ Methods for Function MinuteAccepted in Package RISmed ~~

Description

~~ Methods for function MinuteAccepted in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MinuteEntrez from Medline object.

Description

Extractor for the MinuteEntrez of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

MinuteEntrez(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MinuteEntrez(myeloma)

~~ Methods for Function MinuteEntrez in Package RISmed ~~

Description

~~ Methods for function MinuteEntrez in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MinuteEpublish from Medline object.

Description

Extractor for the MinuteEpublish of a Medline object. This date corresponds to the date the article was published online.

Usage

MinuteEpublish(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MinuteEpublish(myeloma)

~~ Methods for Function MinuteEpublish in Package RISmed ~~

Description

~~ Methods for function MinuteEpublish in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MinuteMedline from Medline object.

Description

Extractor for the MinuteMedline of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

MinuteMedline(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MinuteMedline(myeloma)

~~ Methods for Function MinuteMedline in Package RISmed ~~

Description

~~ Methods for function MinuteMedline in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MinutePmc from Medline object.

Description

Extractor for the MinutePmc of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.

Usage

MinutePmc(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MinutePmc(myeloma)

~~ Methods for Function MinutePmc in Package RISmed ~~

Description

~~ Methods for function MinutePmc in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MinutePpublish from Medline object.

Description

Extractor for the MinutePpublish of a Medline object. This date corresponds to the date the article was published in print.

Usage

MinutePpublish(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MinutePpublish(myeloma)

~~ Methods for Function MinutePpublish in Package RISmed ~~

Description

~~ Methods for function MinutePpublish in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MinutePubmed from Medline object.

Description

Extractor for the MinutePubmed of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.

Usage

MinutePubmed(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MinutePubmed(myeloma)

~~ Methods for Function MinutePubmed in Package RISmed ~~

Description

~~ Methods for function MinutePubmed in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MinuteReceived from Medline object.

Description

Extractor for the MinuteReceived of a Medline object. This date corresponds to the date the article was received.

Usage

MinuteReceived(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MinuteReceived(myeloma)

~~ Methods for Function MinuteReceived in Package RISmed ~~

Description

~~ Methods for function MinuteReceived in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MonthAccepted from Medline object.

Description

Extractor for the MonthAccepted of a Medline object. This date corresponds to the date the article was accepted.

Usage

MonthAccepted(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MonthAccepted(myeloma)

~~ Methods for Function MonthAccepted in Package RISmed ~~

Description

~~ Methods for function MonthAccepted in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MonthArticleDate from Medline object.

Description

Extractor for the MonthArticleDate of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

MonthArticleDate(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MonthArticleDate(myeloma)

~~ Methods for Function MonthArticleDate in Package RISmed ~~

Description

~~ Methods for function MonthArticleDate in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MonthEntrez from Medline object.

Description

Extractor for the MonthEntrez of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

MonthEntrez(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MonthEntrez(myeloma)

~~ Methods for Function MonthEntrez in Package RISmed ~~

Description

~~ Methods for function MonthEntrez in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MonthEpublish from Medline object.

Description

Extractor for the MonthEpublish of a Medline object. This date corresponds to the date the article was published online.

Usage

MonthEpublish(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MonthEpublish(myeloma)

~~ Methods for Function MonthEpublish in Package RISmed ~~

Description

~~ Methods for function MonthEpublish in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MonthMedline from Medline object.

Description

Extractor for the MonthMedline of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

MonthMedline(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MonthMedline(myeloma)

~~ Methods for Function MonthMedline in Package RISmed ~~

Description

~~ Methods for function MonthMedline in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MonthPmc from Medline object.

Description

Extractor for the MonthPmc of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.

Usage

MonthPmc(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MonthPmc(myeloma)

~~ Methods for Function MonthPmc in Package RISmed ~~

Description

~~ Methods for function MonthPmc in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MonthPpublish from Medline object.

Description

Extractor for the MonthPpublish of a Medline object. This date corresponds to the date the article was published in print.

Usage

MonthPpublish(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MonthPpublish(myeloma)

~~ Methods for Function MonthPpublish in Package RISmed ~~

Description

~~ Methods for function MonthPpublish in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MonthPubDate from Medline object.

Description

Extractor for the MonthPubDate of a Medline object. This date corresponds to the date the article was PubDate.

Usage

MonthPubDate(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MonthPubDate(myeloma)

~~ Methods for Function MonthPubDate in Package RISmed ~~

Description

~~ Methods for function MonthPubDate in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MonthPubmed from Medline object.

Description

Extractor for the MonthPubmed of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.

Usage

MonthPubmed(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MonthPubmed(myeloma)

~~ Methods for Function MonthPubmed in Package RISmed ~~

Description

~~ Methods for function MonthPubmed in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MonthReceived from Medline object.

Description

Extractor for the MonthReceived of a Medline object. This date corresponds to the date the article was received.

Usage

MonthReceived(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MonthReceived(myeloma)

~~ Methods for Function MonthReceived in Package RISmed ~~

Description

~~ Methods for function MonthReceived in package RISmed ~~

Methods

signature(object = "Medline")

Extracts MonthRevised from Medline object.

Description

Extractor for the MonthRevised of a Medline object. This date corresponds to the date the article was Revised.

Usage

MonthRevised(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
MonthRevised(myeloma)

~~ Methods for Function MonthRevised in Package RISmed ~~

Description

~~ Methods for function MonthRevised in package RISmed ~~

Methods

signature(object = "Medline")

Example of results from EUtilsGet

Description

First five records of query of NCBI PubMed for "myeloma[MeSh]" in the past year (at the time of this writing) as a Medline object.

Usage

myeloma

Format

A list object with five PubMed article records.

Author(s)

Stephanie Kovalchik [email protected]

Source

PubMed database of the US National Library of Medicine

See Also

EUtilsGet,Medline


Extracts NlmUniqueID from Medline object.

Description

Extractor for the NlmUniqueID of a Medline object.

Usage

NlmUniqueID(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
NlmUniqueID(myeloma)

~~ Methods for Function NlmUniqueID in Package RISmed ~~

Description

~~ Methods for function NlmUniqueID in package RISmed ~~

Methods

signature(object = "Medline")

Extracts PMID from Medline object.

Description

Extractor for the PMID of a Medline object.

Usage

PMID(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
PMID(myeloma)

~~ Methods for Function PMID in Package RISmed ~~

Description

~~ Methods for function PMID in package RISmed ~~

Methods

signature(object = "Medline")

Print method for EUtilsSummary object

Description

Print object of class EUtilsSummary

Methods

signature(object = "EUtilsSummary")

Query translation for EUtilsSummary object.


Extracts PublicationStatus from Medline object.

Description

Extractor for the PublicationStatus of a Medline object.

Usage

PublicationStatus(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
PublicationStatus(myeloma)

~~ Methods for Function PublicationStatus in Package RISmed ~~

Description

~~ Methods for function PublicationStatus in package RISmed ~~

Methods

signature(object = "Medline")

Extracts PublicationType from Medline object.

Description

Extractor for the PublicationType of a Medline object.

Usage

PublicationType(object)

Arguments

object

instance of class Medline

Value

list

See Also

Medline

Examples

data(myeloma)
PublicationType(myeloma)

~~ Methods for Function PublicationType in Package RISmed ~~

Description

~~ Methods for function PublicationType in package RISmed ~~

Methods

signature(object = "Medline")

Extract Query from Medline object.

Description

Extractor for the translated Query of a Medline object.

Usage

Query(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
Query(myeloma)

~~ Methods for Function Query in Package RISmed ~~

Description

~~ Methods for function Query in package RISmed ~~

Methods

signature(object = "Medline")

Count of record results for EUtilsQuery

Description

Returns the number of Ids from a E-utility query

Usage

QueryCount(object)

Arguments

object

object of the EUtilsSummary class.

Value

numeric count

Author(s)

Stephanie Kovalchik

See Also

EUtilsSummary


Get ids from EUtilsQuery

Description

Returns the vector Ids from a E-utility query

Usage

QueryId(object)

Arguments

object

object of the EUtilsSummary class.

Value

character vector of ids

Author(s)

Stephanie Kovalchik

See Also

EUtilsSummary


Get the NCBI query translation from EUtilsQuery

Description

Returns the string translation of a E-utility query

Usage

QueryTranslation(object)

Arguments

object

object of the EUtilsSummary class.

Value

character query translation

Author(s)

Stephanie Kovalchik

See Also

EUtilsSummary


Show method for Medline object

Description

Show object of class Medline

Methods

signature(object = "Medline")

Query translation (if provided) and total fetched record count for Medline object.


Show method for EUtilsSummary object

Description

Show object of class EUtilsSummary

Methods

signature(object = "EUtilsSummary")

Query translation for EUtilsSummary object.


Summary method for EUtilsSummary object

Description

Summary of object of class EUtilsSummary

Methods

signature(object = "EUtilsSummary",...)

Returns the number of records and id vector.


Extracts Title from Medline object.

Description

Extractor for the Title of a Medline object.

Usage

Title(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
Title(myeloma)

~~ Methods for Function Title in Package RISmed ~~

Description

~~ Methods for function Title in package RISmed ~~

Methods

signature(object = "Medline")

Extracts Volume from Medline object.

Description

Extractor for the Volume of a Medline object.

Usage

Volume(object)

Arguments

object

instance of class Medline

Value

vector

See Also

Medline

Examples

data(myeloma)
Volume(myeloma)

~~ Methods for Function Volume in Package RISmed ~~

Description

~~ Methods for function Volume in package RISmed ~~

Methods

signature(object = "Medline")

Extracts YearAccepted from Medline object.

Description

Extractor for the YearAccepted of a Medline object. This date corresponds to the date the article was accepted.

Usage

YearAccepted(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
YearAccepted(myeloma)

~~ Methods for Function YearAccepted in Package RISmed ~~

Description

~~ Methods for function YearAccepted in package RISmed ~~

Methods

signature(object = "Medline")

Extracts YearArticleDate from Medline object.

Description

Extractor for the YearArticleDate of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

YearArticleDate(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
YearArticleDate(myeloma)

~~ Methods for Function YearArticleDate in Package RISmed ~~

Description

~~ Methods for function YearArticleDate in package RISmed ~~

Methods

signature(object = "Medline")

Extracts YearEntrez from Medline object.

Description

Extractor for the YearEntrez of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

YearEntrez(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
YearEntrez(myeloma)

~~ Methods for Function YearEntrez in Package RISmed ~~

Description

~~ Methods for function YearEntrez in package RISmed ~~

Methods

signature(object = "Medline")

Extracts YearEpublish from Medline object.

Description

Extractor for the YearEpublish of a Medline object. This date corresponds to the date the article was published online.

Usage

YearEpublish(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
YearEpublish(myeloma)

~~ Methods for Function YearEpublish in Package RISmed ~~

Description

~~ Methods for function YearEpublish in package RISmed ~~

Methods

signature(object = "Medline")

Extracts YearMedline from Medline object.

Description

Extractor for the YearMedline of a Medline object. This date corresponds to the date the article was ArticleDate.

Usage

YearMedline(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
YearMedline(myeloma)

~~ Methods for Function YearMedline in Package RISmed ~~

Description

~~ Methods for function YearMedline in package RISmed ~~

Methods

signature(object = "Medline")

Extracts YearPmc from Medline object.

Description

Extractor for the YearPmc of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.

Usage

YearPmc(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
YearPmc(myeloma)

~~ Methods for Function YearPmc in Package RISmed ~~

Description

~~ Methods for function YearPmc in package RISmed ~~

Methods

signature(object = "Medline")

Extracts YearPpublish from Medline object.

Description

Extractor for the YearPpublish of a Medline object. This date corresponds to the date the article was published in print.

Usage

YearPpublish(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
YearPpublish(myeloma)

~~ Methods for Function YearPpublish in Package RISmed ~~

Description

~~ Methods for function YearPpublish in package RISmed ~~

Methods

signature(object = "Medline")

Extracts YearPubDate from Medline object.

Description

Extractor for the YearPubDate of a Medline object. This date corresponds to the date the article was PubDate.

Usage

YearPubDate(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
YearPubDate(myeloma)

~~ Methods for Function YearPubDate in Package RISmed ~~

Description

~~ Methods for function YearPubDate in package RISmed ~~

Methods

signature(object = "Medline")

Extracts YearPubmed from Medline object.

Description

Extractor for the YearPubmed of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.

Usage

YearPubmed(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
YearPubmed(myeloma)

~~ Methods for Function YearPubmed in Package RISmed ~~

Description

~~ Methods for function YearPubmed in package RISmed ~~

Methods

signature(object = "Medline")

Extracts YearReceived from Medline object.

Description

Extractor for the YearReceived of a Medline object. This date corresponds to the date the article was received.

Usage

YearReceived(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
YearReceived(myeloma)

~~ Methods for Function YearReceived in Package RISmed ~~

Description

~~ Methods for function YearReceived in package RISmed ~~

Methods

signature(object = "Medline")

Extracts YearRevised from Medline object.

Description

Extractor for the YearRevised of a Medline object. This date corresponds to the date the article was Revised.

Usage

YearRevised(object)

Arguments

object

instance of class Medline

Value

vector

References

https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst

See Also

Medline

Examples

data(myeloma)
YearRevised(myeloma)

~~ Methods for Function YearRevised in Package RISmed ~~

Description

~~ Methods for function YearRevised in package RISmed ~~

Methods

signature(object = "Medline")